High-performance analysis servers, compute clusters and storage are available for data processing and analysis by research and innovation groups across the organization. Visit Computational Resources under IT Services to learn more about these services.

Free and commercial data analysis applications may be used on ERIS Computational Resources at no cost to users. Visit the sections below to see what is available. If you are looking to use a free or open-source application not already on ERIS Computational Resources, please request an install by contacting hpcsupport@partners.org. If you are interested in using a commercial application not listed below, please let us know, but understand that these requests will be placed on a list for review and dependent upon resources.

Bioinformatics Data Processing

Expand this section to view what bioinformatics and image processing tools are available on the ERIS Computational Resources.

Application Windows Analysis Servers ERISOne Cluster ERISOne Remote Desktop Web Application Purchase
Genomics Tools

bowtie2, cuflinks, bwa, Maq, hisat2bedtools2htseq, samtools, bcftools, htslibbamtools, MACS2, vcftoolsgatk4, blast+, bcl2fastq2

 
Green Checkmark
     
plink2
Green Checkmark

 

Green Checkmark

 

     
igv    
Green Checkmark

 

   
galaxy, ucsc      
Green Checkmark

 

 
Molecular Modeling
NAMD, CHARMM  
Green Checkmark

 

     

Description: Green checkmark Available, Grey checkmark Coming soon

 

Medical Image Processing

Expand this section to view what image processing tools are available.

Application Windows Analysis Servers ERISOne Cluster ERISOne Remote Desktop Web Application Purchase
FreeSurfer
Green Checkmark
Green Checkmark
     
CellProfiler
Green Checkmark

 

 

   
MaxQuant
Green Checkmark
       
ImageJ
Green Checkmark
Green Checkmark
     
MATLAB (Image Processing Toolbox)
Green Checkmark
Green Checkmark
   
Green Checkmark

Description: Green checkmark Available, Grey checkmark Coming soon

Statistics, Analysis and Visualization

Expand this section to view the statistical software programs that are available and on which ERIS Computational Resource you can find it.

Application Windows Analysis Servers ERISOne Cluster ERISOne Remote Desktop Web Application Purchase
Stata Green Checkmark   Green Checkmark  

 

Green Checkmark

 

SAS    

 

  Green Checkmark
Graphpad Prism         

 

Green Checkmark

 

RStudio

 

Green Checkmark Green Checkmark Green Checkmark  
Shiny   Green Checkmark

 

 

   
SPSS        

Free

Description: Green checkmark Available, Grey checkmark Coming soon

Big Data Analytics and Machine Learning

Expand this section to learn more about Big Data tools and Machine Learning on the ERIS Computational Resources.

Application Windows Analysis Servers ERISOne Cluster IDEA Platform Purchase
Caffe   Green Checkmark    
DL4J   Green Checkmark

 

 
MATLAB  Green Checkmark Green Checkmark   Green Checkmark
Spark   Green Checkmark Green Checkmark  
Hadoop     Green Checkmark  
HBase     Green Checkmark  
Hive     Green Checkmark  
Pig     Green Checkmark  

Description: Green checkmark Available, Grey checkmark Coming soon

Developer Tools (Jupyter / R Studio)

Learn more about using Jupyter, R Studio and R Shiny on ERISOne at Mass General Brigham.

Learn more about using Jupyter, R Studio and R Shiny on ERISOne Linux Cluster resources at Mass General Brigham.

Jupyter at Mass General Brigham

There are several different ways to use Jupyter at Mass General Brigham

R Studio at Mass General Brigham

There are several different ways to use R at Mass General Brigham

  • Mass General Brigham Rstudio Server
    • Mass General Brigham Rstudio provides the user-friendly interface to the users with access to the ERISOne file system.
    • ERISOne account is required for this service.
  • R in ERISOne
    • In ERISOne cluster settings, the users can utilize R in a more flexible, distributed and heavy-computing way.
    • ERISOne account is required for this service.
  • R with IDEA platform
    • IDEA platform is our newest big data platform. With IDEA, R can be used with Hadoop/Spark. 
    • IDEA platform account is required for this service.

R Shiny at Mass General Brigham

The R Shiny server is now available for selected applications to be published on ERISOne, for Mass General Brigham users only. The R package Shiny allows easy-to-build interactive web apps, built and deployed using R. To request a Shiny production folder, please fill out this form